J4_7U2J_014

3D structure

PDB id

7U2J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

G(4SU)AG*CGA*UAUACG*UC

Length

15 nucleotides

Bulged bases

7U2J|1|1w|C|48

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7U2J_014 not in the Motif Atlas

Homologous match to J4_1IL2_001

Geometric discrepancy: 0.3233

The information below is about J4_1IL2_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.28

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7U2J|1|1w|G|7
7U2J|1|1w|4SU|8
7U2J|1|1w|A|9
7U2J|1|1w|G|10
*
7U2J|1|1w|C|25
7U2J|1|1w|G|26
7U2J|1|1w|A|27
*
7U2J|1|1w|U|43
7U2J|1|1w|A|44
7U2J|1|1w|U|45
7U2J|1|1w|A|46
7U2J|1|1w|C|48
7U2J|1|1w|G|49
*
7U2J|1|1w|U|65
7U2J|1|1w|C|66

Current chains

Chain 1w

A-site Aminoacyl-tRNA Gly-NH-tRNAgly

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA