J4_7U2J_017

3D structure

PDB id

7U2J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

7U2J|1|2A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7U2J_017 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0861

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7U2J|1|2A|C|268
7U2J|1|2A|U|269
*
7U2J|1|2A|G|370
7U2J|1|2A|A|371
7U2J|1|2A|G|372
7U2J|1|2A|U|373
7U2J|1|2A|A|374
7U2J|1|2A|C|375
*
7U2J|1|2A|G|399
7U2J|1|2A|G|400
7U2J|1|2A|A|401
7U2J|1|2A|A|402
7U2J|1|2A|U|403
7U2J|1|2A|C|404
7U2J|1|2A|U|405
7U2J|1|2A|G|406
*
7U2J|1|2A|U|421
7U2J|1|2A|A|422
7U2J|1|2A|A|423
7U2J|1|2A|G|424

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2I

50S ribosomal protein L9