J4_7U2J_029

3D structure

PDB id

7U2J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GGG*CGAAAG*CCCUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

7U2J|1|2a|G|576, 7U2J|1|2a|A|815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7U2J_029 not in the Motif Atlas

Homologous match to J4_4LFB_003

Geometric discrepancy: 0.0538

The information below is about J4_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_14595.1

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

7U2J|1|2a|G|575
7U2J|1|2a|G|576
7U2J|1|2a|G|577
*
7U2J|1|2a|C|764
7U2J|1|2a|G|765
7U2J|1|2a|A|766
7U2J|1|2a|A|767
7U2J|1|2a|A|768
7U2J|1|2a|G|769
*
7U2J|1|2a|C|810
7U2J|1|2a|C|811
7U2J|1|2a|C|812
7U2J|1|2a|U|813
7U2J|1|2a|A|814
7U2J|1|2a|A|815
7U2J|1|2a|A|816
7U2J|1|2a|C|817
7U2J|1|2a|G|818
7U2J|1|2a|A|819
7U2J|1|2a|U|820
7U2J|1|2a|G|821
*
7U2J|1|2a|C|879
7U2J|1|2a|C|880

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2h

30S ribosomal protein S8

Chain 2l

30S ribosomal protein S12

Chain 2o

30S ribosomal protein S15

Chain 2q

30S ribosomal protein S17