3D structure

PDB id
7UCJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S translation initiation complex with mRNA and Harringtonine
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GGUUC*GGUCAG*UC*GGCCGUAC
Length
21 nucleotides
Bulged bases
7UCJ|1|5|C|2437
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7UCJ_005 not in the Motif Atlas
Homologous match to J4_8C3A_004
Geometric discrepancy: 0.096
The information below is about J4_8C3A_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7UCJ|1|5|G|2406
7UCJ|1|5|G|2407
7UCJ|1|5|U|2408
7UCJ|1|5|U|2409
7UCJ|1|5|C|2410
*
7UCJ|1|5|G|2434
7UCJ|1|5|G|2435
7UCJ|1|5|U|2436
7UCJ|1|5|C|2437
7UCJ|1|5|A|2438
7UCJ|1|5|G|2439
*
7UCJ|1|5|U|2538
7UCJ|1|5|C|2539
*
7UCJ|1|5|G|2777
7UCJ|1|5|G|2778
7UCJ|1|5|C|2779
7UCJ|1|5|C|2780
7UCJ|1|5|G|2781
7UCJ|1|5|U|2782
7UCJ|1|5|A|2783
7UCJ|1|5|C|2784

Current chains

Chain 5
28s rRNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain R
60S ribosomal protein L19
Chain X
60S ribosomal protein L23a
Chain g
60S ribosomal protein L34
Chain h
60S ribosomal protein L35
Chain j
60S ribosomal protein L37
Chain k
60S ribosomal protein L38
Chain l
60S ribosomal protein L39

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1576 s