J4_7UCK_004

3D structure

PDB id

7UCK (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S translation initiation complex with ac4c(-1) mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

(OMC)AAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

7UCK|1|5|A|2366, 7UCK|1|5|U|2369, 7UCK|1|5|U|2828

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7UCK|1|5|OMC|2365
7UCK|1|5|A|2366
7UCK|1|5|A|2367
7UCK|1|5|A|2368
7UCK|1|5|U|2369
7UCK|1|5|A|2370
7UCK|1|5|U|2371
*
7UCK|1|5|A|2389
7UCK|1|5|G|2390
7UCK|1|5|G|2391
*
7UCK|1|5|C|2824
7UCK|1|5|A|2825
7UCK|1|5|U|2826
7UCK|1|5|G|2827
7UCK|1|5|U|2828
7UCK|1|5|U|2829
*
7UCK|1|5|A|3856
7UCK|1|5|G|3857

Current chains

Chain 5

28s rRNA

Nearby chains

Chain P

60S ribosomal protein L17

Chain R

60S ribosomal protein L19

Chain d

60S ribosomal protein L31