J4_7UCK_007
3D structure
- PDB id
- 7UCK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S translation initiation complex with ac4c(-1) mRNA and Harringtonine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GACUG*CAAAG*UGAUU*AUGA(A2M)C
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7UCK_007 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.0837
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.1
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
7UCK|1|5|G|3634
7UCK|1|5|A|3635
7UCK|1|5|C|3636
7UCK|1|5|U|3637
7UCK|1|5|G|3638
*
7UCK|1|5|C|3650
7UCK|1|5|A|3651
7UCK|1|5|A|3652
7UCK|1|5|A|3653
7UCK|1|5|G|3654
*
7UCK|1|5|U|3690
7UCK|1|5|G|3691
7UCK|1|5|A|3692
7UCK|1|5|U|3693
7UCK|1|5|U|3694
*
7UCK|1|5|A|3821
7UCK|1|5|U|3822
7UCK|1|5|G|3823
7UCK|1|5|A|3824
7UCK|1|5|A2M|3825
7UCK|1|5|C|3826
Current chains
- Chain 5
- 28s rRNA
Nearby chains
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain A
- 60S ribosomal protein L8
- Chain n
- eL41
- Chain p
- 60S ribosomal protein L37a
Coloring options: