J4_7UG7_001

3D structure

PDB id

7UG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

7UG7|1|16|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7UG7_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.3331

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7UG7|1|16|G|115
7UG7|1|16|A|116
7UG7|1|16|G|117
7UG7|1|16|U|118
7UG7|1|16|A|119
7UG7|1|16|A|120
7UG7|1|16|U|121
7UG7|1|16|G|122
*
7UG7|1|16|U|239
7UG7|1|16|G|240
*
7UG7|1|16|C|286
7UG7|1|16|U|287
7UG7|1|16|A|288
7UG7|1|16|G|289
*
7UG7|1|16|C|311
7UG7|1|16|C|312

Current chains

Chain 16

16S rRNA

Nearby chains

Chain SP

30S ribosomal protein S16

Chain SQ

30S ribosomal protein S17