J4_7UG7_002

3D structure

PDB id

7UG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

7UG7|1|16|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7UG7_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1008

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7UG7|1|16|G|142
7UG7|1|16|A|143
7UG7|1|16|G|144
*
7UG7|1|16|C|178
7UG7|1|16|A|179
7UG7|1|16|U|180
7UG7|1|16|A|181
7UG7|1|16|A|182
7UG7|1|16|C|183
7UG7|1|16|G|184
*
7UG7|1|16|C|193
7UG7|1|16|C|194
7UG7|1|16|A|195
7UG7|1|16|A|196
7UG7|1|16|A|197
7UG7|1|16|G|198
*
7UG7|1|16|U|219
7UG7|1|16|G|220
7UG7|1|16|C|221

Current chains

Chain 16

16S rRNA

Nearby chains

Chain ST

30S ribosomal protein S20