J4_7UG7_004

3D structure

PDB id

7UG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7UG7|1|23|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7UG7_004 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.116

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7UG7|1|23|C|268
7UG7|1|23|C|269
*
7UG7|1|23|G|370
7UG7|1|23|A|371
7UG7|1|23|G|372
7UG7|1|23|U|373
7UG7|1|23|A|374
7UG7|1|23|G|375
*
7UG7|1|23|U|399
7UG7|1|23|G|400
7UG7|1|23|A|401
7UG7|1|23|A|402
7UG7|1|23|U|403
7UG7|1|23|A|404
7UG7|1|23|U|405
7UG7|1|23|G|406
*
7UG7|1|23|C|421
7UG7|1|23|A|422
7UG7|1|23|A|423
7UG7|1|23|G|424

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LI

50S ribosomal protein L9

Chain Lb

50S ribosomal protein L28