J4_7UG7_007

3D structure

PDB id

7UG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

7UG7|1|23|G|1271, 7UG7|1|23|A|1272, 7UG7|1|23|U|1273, 7UG7|1|23|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7UG7_007 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.0582

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

7UG7|1|23|C|1270
7UG7|1|23|G|1271
7UG7|1|23|A|1272
7UG7|1|23|U|1273
7UG7|1|23|A|1274
7UG7|1|23|A|1275
7UG7|1|23|A|1276
*
7UG7|1|23|U|1294
7UG7|1|23|C|1295
*
7UG7|1|23|G|1645
7UG7|1|23|C|1646
7UG7|1|23|U|1647
7UG7|1|23|U|1648
*
7UG7|1|23|A|2009
7UG7|1|23|G|2010

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LQ

50S ribosomal protein L17

Chain LV

50S ribosomal protein L22

Chain Lf

50S ribosomal protein L32