J4_7UG7_014

3D structure

PDB id

7UG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7UG7_014 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.0521

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

7UG7|1|23|G|2643
7UG7|1|23|G|2644
7UG7|1|23|G|2645
7UG7|1|23|C|2646
*
7UG7|1|23|G|2674
7UG7|1|23|A|2675
7UG7|1|23|C|2676
*
7UG7|1|23|G|2731
7UG7|1|23|G|2732
7UG7|1|23|A|2733
7UG7|1|23|A|2734
7UG7|1|23|G|2735
*
7UG7|1|23|U|2769
7UG7|1|23|G|2770
7UG7|1|23|C|2771

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LC

50S ribosomal protein L3

Chain LM

50S ribosomal protein L13

Chain LN

50S ribosomal protein L14