J4_7UNR_001

3D structure

PDB id

7UNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAGUAG*UGAACAUG*CAAG

Length

20 nucleotides

Bulged bases

7UNR|1|A|U|396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7UNR_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1319

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7UNR|1|A|C|268
7UNR|1|A|C|269
*
7UNR|1|A|G|361
7UNR|1|A|A|362
7UNR|1|A|G|363
7UNR|1|A|U|364
7UNR|1|A|A|365
7UNR|1|A|G|366
*
7UNR|1|A|U|390
7UNR|1|A|G|391
7UNR|1|A|A|392
7UNR|1|A|A|393
7UNR|1|A|C|394
7UNR|1|A|A|395
7UNR|1|A|U|396
7UNR|1|A|G|397
*
7UNR|1|A|C|412
7UNR|1|A|A|413
7UNR|1|A|A|414
7UNR|1|A|G|415

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain Z

50S ribosomal protein L28