J4_7UNR_006

3D structure

PDB id

7UNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UC*GGUUAG*CU*AACCGUA

Length

17 nucleotides

Bulged bases

7UNR|1|A|U|1328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7UNR_006 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0989

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7UNR|1|A|U|1300
7UNR|1|A|C|1301
*
7UNR|1|A|G|1325
7UNR|1|A|G|1326
7UNR|1|A|U|1327
7UNR|1|A|U|1328
7UNR|1|A|A|1329
7UNR|1|A|G|1330
*
7UNR|1|A|C|1391
7UNR|1|A|U|1392
*
7UNR|1|A|A|1587
7UNR|1|A|A|1588
7UNR|1|A|C|1589
7UNR|1|A|C|1590
7UNR|1|A|G|1591
7UNR|1|A|U|1592
7UNR|1|A|A|1593

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain V

50S ribosomal protein L23