3D structure

PDB id
7UNU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CU(2MG)*CG*CCUAAGGUAG*CGAAUG
Length
21 nucleotides
Bulged bases
7UNU|1|A|U|1958
QA status
Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7UNU_009 not in the Motif Atlas
Homologous match to J4_9DFE_008
Geometric discrepancy: 0.0971
The information below is about J4_9DFE_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_42306.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
5

Unit IDs

7UNU|1|A|C|1820
7UNU|1|A|U|1821
7UNU|1|A|2MG|1822
*
7UNU|1|A|C|1892
7UNU|1|A|G|1893
*
7UNU|1|A|C|1911
7UNU|1|A|C|1912
7UNU|1|A|U|1913
7UNU|1|A|A|1914
7UNU|1|A|A|1915
7UNU|1|A|G|1916
7UNU|1|A|G|1917
7UNU|1|A|U|1918
7UNU|1|A|A|1919
7UNU|1|A|G|1920
*
7UNU|1|A|C|1954
7UNU|1|A|G|1955
7UNU|1|A|A|1956
7UNU|1|A|A|1957
7UNU|1|A|U|1958
7UNU|1|A|G|1959

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L2
Chain a
Small subunit ribosomal RNA; SSU rRNA
Chain v
Transfer RNA; tRNA

Coloring options:


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