J4_7UNU_014
3D structure
- PDB id
- 7UNU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 7UNU|1|a|C|570, 7UNU|1|a|A|809, 7UNU|1|a|C|811, 7UNU|1|a|A|813
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7UNU_014 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.0698
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
7UNU|1|a|G|569
7UNU|1|a|C|570
7UNU|1|a|G|571
*
7UNU|1|a|C|758
7UNU|1|a|G|759
7UNU|1|a|A|760
7UNU|1|a|A|761
7UNU|1|a|A|762
7UNU|1|a|G|763
*
7UNU|1|a|C|804
7UNU|1|a|C|805
7UNU|1|a|G|806
7UNU|1|a|U|807
7UNU|1|a|A|808
7UNU|1|a|A|809
7UNU|1|a|A|810
7UNU|1|a|C|811
7UNU|1|a|G|812
7UNU|1|a|A|813
7UNU|1|a|U|814
7UNU|1|a|G|815
*
7UNU|1|a|C|873
7UNU|1|a|C|874
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain h
- 30S ribosomal protein S8
- Chain l
- 30S ribosomal protein S12
- Chain o
- 30S ribosomal protein S15
- Chain q
- 30S ribosomal protein S17
- Chain u
- 30S ribosomal protein S21
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