J4_7UNV_005

3D structure

PDB id

7UNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGUUC*GGUUAG*CU*AACCGUAC

Length

21 nucleotides

Bulged bases

7UNV|1|A|U|1328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7UNV_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0879

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7UNV|1|A|G|1297
7UNV|1|A|G|1298
7UNV|1|A|U|1299
7UNV|1|A|U|1300
7UNV|1|A|C|1301
*
7UNV|1|A|G|1325
7UNV|1|A|G|1326
7UNV|1|A|U|1327
7UNV|1|A|U|1328
7UNV|1|A|A|1329
7UNV|1|A|G|1330
*
7UNV|1|A|C|1391
7UNV|1|A|U|1392
*
7UNV|1|A|A|1587
7UNV|1|A|A|1588
7UNV|1|A|C|1589
7UNV|1|A|C|1590
7UNV|1|A|G|1591
7UNV|1|A|U|1592
7UNV|1|A|A|1593
7UNV|1|A|C|1594

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain V

50S ribosomal protein L23