3D structure

PDB id
7UNV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
GCG*CGAAAG*CCGUAAACGAUG*CC
Length
23 nucleotides
Bulged bases
7UNV|1|a|C|570, 7UNV|1|a|A|809
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7UNV_014 not in the Motif Atlas
Homologous match to J4_5J7L_003
Geometric discrepancy: 0.0712
The information below is about J4_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

7UNV|1|a|G|569
7UNV|1|a|C|570
7UNV|1|a|G|571
*
7UNV|1|a|C|758
7UNV|1|a|G|759
7UNV|1|a|A|760
7UNV|1|a|A|761
7UNV|1|a|A|762
7UNV|1|a|G|763
*
7UNV|1|a|C|804
7UNV|1|a|C|805
7UNV|1|a|G|806
7UNV|1|a|U|807
7UNV|1|a|A|808
7UNV|1|a|A|809
7UNV|1|a|A|810
7UNV|1|a|C|811
7UNV|1|a|G|812
7UNV|1|a|A|813
7UNV|1|a|U|814
7UNV|1|a|G|815
*
7UNV|1|a|C|873
7UNV|1|a|C|874

Current chains

Chain a
16S Ribosomal RNA

Nearby chains

Chain h
30S ribosomal protein S8
Chain l
30S ribosomal protein S12
Chain o
30S ribosomal protein S15
Chain q
30S ribosomal protein S17

Coloring options:


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