J4_7UNW_001

3D structure

PDB id

7UNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CC*GAGUAG*UGAACAUG*CAAG

Length

20 nucleotides

Bulged bases

7UNW|1|A|U|396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7UNW_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.122

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7UNW|1|A|C|268
7UNW|1|A|C|269
*
7UNW|1|A|G|361
7UNW|1|A|A|362
7UNW|1|A|G|363
7UNW|1|A|U|364
7UNW|1|A|A|365
7UNW|1|A|G|366
*
7UNW|1|A|U|390
7UNW|1|A|G|391
7UNW|1|A|A|392
7UNW|1|A|A|393
7UNW|1|A|C|394
7UNW|1|A|A|395
7UNW|1|A|U|396
7UNW|1|A|G|397
*
7UNW|1|A|C|412
7UNW|1|A|A|413
7UNW|1|A|A|414
7UNW|1|A|G|415

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain Z

50S ribosomal protein L28