J4_7UNW_002

3D structure

PDB id

7UNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGAAC*GGCC*GUG*CGUAC

Length

17 nucleotides

Bulged bases

7UNW|1|A|U|318

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7UNW_002 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.5759

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

7UNW|1|A|G|291
7UNW|1|A|G|292
7UNW|1|A|A|293
7UNW|1|A|A|294
7UNW|1|A|C|295
*
7UNW|1|A|G|310
7UNW|1|A|G|311
7UNW|1|A|C|312
7UNW|1|A|C|313
*
7UNW|1|A|G|317
7UNW|1|A|U|318
7UNW|1|A|G|319
*
7UNW|1|A|C|331
7UNW|1|A|G|332
7UNW|1|A|U|333
7UNW|1|A|A|334
7UNW|1|A|C|335

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain W

50S ribosomal protein L24