J4_7UPH_003
3D structure
- PDB id
- 7UPH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a ribosome with tethered subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.18 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 7UPH|1|I|C|575, 7UPH|1|I|A|814
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7UPH_003 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.2046
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
7UPH|1|I|G|574
7UPH|1|I|C|575
7UPH|1|I|G|576
*
7UPH|1|I|C|763
7UPH|1|I|G|764
7UPH|1|I|A|765
7UPH|1|I|A|766
7UPH|1|I|A|767
7UPH|1|I|G|768
*
7UPH|1|I|C|809
7UPH|1|I|C|810
7UPH|1|I|G|811
7UPH|1|I|U|812
7UPH|1|I|A|813
7UPH|1|I|A|814
7UPH|1|I|A|815
7UPH|1|I|C|816
7UPH|1|I|G|817
7UPH|1|I|A|818
7UPH|1|I|U|819
7UPH|1|I|G|820
*
7UPH|1|I|C|878
7UPH|1|I|C|879
Current chains
- Chain I
- Tethered rRNA
Nearby chains
- Chain B
- 30S ribosomal protein S15
- Chain D
- 30S ribosomal protein S17
- Chain H
- 30S ribosomal protein S21
- Chain c
- 30S ribosomal protein S8
- Chain f
- 30S ribosomal protein S11
- Chain g
- 30S ribosomal protein S12
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