J4_7UPH_006
3D structure
- PDB id
- 7UPH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a ribosome with tethered subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.18 Å
Loop
- Sequence
- CAAG*CGAAG*CGAG*CGUUAAG
- Length
- 20 nucleotides
- Bulged bases
- 7UPH|1|I|U|2153, 7UPH|1|I|A|2154
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7UPH_006 not in the Motif Atlas
- Homologous match to J4_5J7L_020
- Geometric discrepancy: 0.2829
- The information below is about J4_5J7L_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_60168.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
7UPH|1|I|C|2101
7UPH|1|I|A|2102
7UPH|1|I|A|2103
7UPH|1|I|G|2104
*
7UPH|1|I|C|2124
7UPH|1|I|G|2125
7UPH|1|I|A|2126
7UPH|1|I|A|2127
7UPH|1|I|G|2128
*
7UPH|1|I|C|2135
7UPH|1|I|G|2136
7UPH|1|I|A|2137
7UPH|1|I|G|2138
*
7UPH|1|I|C|2150
7UPH|1|I|G|2151
7UPH|1|I|U|2152
7UPH|1|I|U|2153
7UPH|1|I|A|2154
7UPH|1|I|A|2155
7UPH|1|I|G|2156
Current chains
- Chain I
- Tethered rRNA
Nearby chains
- Chain M
- 50S ribosomal protein L4
- Chain T
- 50S ribosomal protein L15
- Chain l
- 50S ribosomal protein L35
Coloring options: