3D structure

PDB id
7UPH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a ribosome with tethered subunits
Experimental method
ELECTRON MICROSCOPY
Resolution
4.18 Å

Loop

Sequence
GGAAG*CGCG*CAG*CGUAC
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7UPH_014 not in the Motif Atlas
Homologous match to J4_9DFE_002
Geometric discrepancy: 0.2774
The information below is about J4_9DFE_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_71729.5
Basepair signature
cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
Number of instances in this motif group
4

Unit IDs

7UPH|1|I|G|1797
7UPH|1|I|G|1798
7UPH|1|I|A|1799
7UPH|1|I|A|1800
7UPH|1|I|G|1801
*
7UPH|1|I|C|1816
7UPH|1|I|G|1817
7UPH|1|I|C|1818
7UPH|1|I|G|1819
*
7UPH|1|I|C|1823
7UPH|1|I|A|1824
7UPH|1|I|G|1825
*
7UPH|1|I|C|1837
7UPH|1|I|G|1838
7UPH|1|I|U|1839
7UPH|1|I|A|1840
7UPH|1|I|C|1841

Current chains

Chain I
Tethered rRNA

Nearby chains

Chain M
50S ribosomal protein L4
Chain t
50S ribosomal protein L24

Coloring options:


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