J4_7UPH_014
3D structure
- PDB id
- 7UPH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a ribosome with tethered subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.18 Å
Loop
- Sequence
- GGAAG*CGCG*CAG*CGUAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7UPH_014 not in the Motif Atlas
- Homologous match to J4_9DFE_002
- Geometric discrepancy: 0.2774
- The information below is about J4_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_71729.5
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
7UPH|1|I|G|1797
7UPH|1|I|G|1798
7UPH|1|I|A|1799
7UPH|1|I|A|1800
7UPH|1|I|G|1801
*
7UPH|1|I|C|1816
7UPH|1|I|G|1817
7UPH|1|I|C|1818
7UPH|1|I|G|1819
*
7UPH|1|I|C|1823
7UPH|1|I|A|1824
7UPH|1|I|G|1825
*
7UPH|1|I|C|1837
7UPH|1|I|G|1838
7UPH|1|I|U|1839
7UPH|1|I|A|1840
7UPH|1|I|C|1841
Current chains
- Chain I
- Tethered rRNA
Nearby chains
- Chain M
- 50S ribosomal protein L4
- Chain t
- 50S ribosomal protein L24
Coloring options: