3D structure

PDB id
7UQZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain
Experimental method
ELECTRON MICROSCOPY
Resolution
2.44 Å

Loop

Sequence
CUAUG*CGUC*GAG*CGUGUG
Length
18 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7UQZ_002 not in the Motif Atlas
Homologous match to J4_8P9A_013
Geometric discrepancy: 0.1252
The information below is about J4_8P9A_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_12410.1
Basepair signature
cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW
Number of instances in this motif group
2

Unit IDs

7UQZ|1|1|C|185
7UQZ|1|1|U|186
7UQZ|1|1|A|187
7UQZ|1|1|U|188
7UQZ|1|1|G|189
*
7UQZ|1|1|C|205
7UQZ|1|1|G|206
7UQZ|1|1|U|207
7UQZ|1|1|C|208
*
7UQZ|1|1|G|212
7UQZ|1|1|A|213
7UQZ|1|1|G|214
*
7UQZ|1|1|C|226
7UQZ|1|1|G|227
7UQZ|1|1|U|228
7UQZ|1|1|G|229
7UQZ|1|1|U|230
7UQZ|1|1|G|231

Current chains

Chain 1
25S rRNA

Nearby chains

Chain 2
5.8S ribosomal RNA; 5.8S rRNA
Chain C
60S ribosomal protein L4-A
Chain Y
60S ribosomal protein L26-A

Coloring options:


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