J4_7UVV_001

3D structure

PDB id

7UVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome-Streptothricin-F complex: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7UVV|1|A|U|404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7UVV_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.117

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7UVV|1|A|C|275
7UVV|1|A|C|276
*
7UVV|1|A|G|369
7UVV|1|A|A|370
7UVV|1|A|G|371
7UVV|1|A|U|372
7UVV|1|A|A|373
7UVV|1|A|G|374
*
7UVV|1|A|U|398
7UVV|1|A|G|399
7UVV|1|A|A|400
7UVV|1|A|A|401
7UVV|1|A|U|402
7UVV|1|A|A|403
7UVV|1|A|U|404
7UVV|1|A|G|405
*
7UVV|1|A|C|420
7UVV|1|A|A|421
7UVV|1|A|A|422
7UVV|1|A|G|423

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain W

50S ribosomal protein L28