J4_7UVV_006

3D structure

PDB id

7UVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome-Streptothricin-F complex: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

7UVV|1|A|G|1336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7UVV_006 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0869

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7UVV|1|A|U|1308
7UVV|1|A|C|1309
*
7UVV|1|A|G|1333
7UVV|1|A|G|1334
7UVV|1|A|U|1335
7UVV|1|A|G|1336
7UVV|1|A|A|1337
7UVV|1|A|G|1338
*
7UVV|1|A|C|1399
7UVV|1|A|U|1400
*
7UVV|1|A|A|1595
7UVV|1|A|A|1596
7UVV|1|A|U|1597
7UVV|1|A|C|1598
7UVV|1|A|G|1599
7UVV|1|A|U|1600
7UVV|1|A|A|1601

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L23