J4_7UVV_012

3D structure

PDB id

7UVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome-Streptothricin-F complex: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GAGUAAUG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

7UVV|1|a|U|117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7UVV_012 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2068

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7UVV|1|a|G|111
7UVV|1|a|A|112
7UVV|1|a|G|113
7UVV|1|a|U|114
7UVV|1|a|A|115
7UVV|1|a|A|116
7UVV|1|a|U|117
7UVV|1|a|G|118
*
7UVV|1|a|U|235
7UVV|1|a|C|236
*
7UVV|1|a|G|282
7UVV|1|a|U|283
7UVV|1|a|A|284
7UVV|1|a|G|285
*
7UVV|1|a|C|307
7UVV|1|a|C|308

Current chains

Chain a

16s Ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17