J4_7UVW_001

3D structure

PDB id

7UVW (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7UVW|1|A|U|404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7UVW_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1155

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7UVW|1|A|C|275
7UVW|1|A|C|276
*
7UVW|1|A|G|369
7UVW|1|A|A|370
7UVW|1|A|G|371
7UVW|1|A|U|372
7UVW|1|A|A|373
7UVW|1|A|G|374
*
7UVW|1|A|U|398
7UVW|1|A|G|399
7UVW|1|A|A|400
7UVW|1|A|A|401
7UVW|1|A|U|402
7UVW|1|A|A|403
7UVW|1|A|U|404
7UVW|1|A|G|405
*
7UVW|1|A|C|420
7UVW|1|A|A|421
7UVW|1|A|A|422
7UVW|1|A|G|423

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain W

50S ribosomal protein L28