J4_7UVW_004

3D structure

PDB id

7UVW (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

CGACAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

7UVW|1|A|G|1266, 7UVW|1|A|A|1267, 7UVW|1|A|C|1268, 7UVW|1|A|A|1270, 7UVW|1|A|U|1645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7UVW_004 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.1153

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

7UVW|1|A|C|1265
7UVW|1|A|G|1266
7UVW|1|A|A|1267
7UVW|1|A|C|1268
7UVW|1|A|A|1269
7UVW|1|A|A|1270
7UVW|1|A|A|1271
*
7UVW|1|A|U|1289
7UVW|1|A|C|1290
*
7UVW|1|A|G|1643
7UVW|1|A|C|1644
7UVW|1|A|U|1645
7UVW|1|A|U|1646
*
7UVW|1|A|A|2005
7UVW|1|A|G|2006

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L17

Chain R

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32