J4_7UVW_012

3D structure

PDB id

7UVW (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

GAGUAAUG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

7UVW|1|a|U|117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7UVW_012 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2072

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7UVW|1|a|G|111
7UVW|1|a|A|112
7UVW|1|a|G|113
7UVW|1|a|U|114
7UVW|1|a|A|115
7UVW|1|a|A|116
7UVW|1|a|U|117
7UVW|1|a|G|118
*
7UVW|1|a|U|235
7UVW|1|a|C|236
*
7UVW|1|a|G|282
7UVW|1|a|U|283
7UVW|1|a|A|284
7UVW|1|a|G|285
*
7UVW|1|a|C|307
7UVW|1|a|C|308

Current chains

Chain a

16s Ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17