J4_7UVY_012

3D structure

PDB id

7UVY (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome-Streptothricin-D complex: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

GAGUAAUG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

7UVY|1|a|U|117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7UVY_012 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2235

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7UVY|1|a|G|111
7UVY|1|a|A|112
7UVY|1|a|G|113
7UVY|1|a|U|114
7UVY|1|a|A|115
7UVY|1|a|A|116
7UVY|1|a|U|117
7UVY|1|a|G|118
*
7UVY|1|a|U|235
7UVY|1|a|C|236
*
7UVY|1|a|G|282
7UVY|1|a|U|283
7UVY|1|a|A|284
7UVY|1|a|G|285
*
7UVY|1|a|C|307
7UVY|1|a|C|308

Current chains

Chain a

16s Ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17