J4_7UW1_009

3D structure

PDB id

7UW1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii 70S ribosome-Streptothricin-D complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

7UW1|1|A|U|1967

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7UW1_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.12

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.2

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

6

Unit IDs

7UW1|1|A|C|1829
7UW1|1|A|U|1830
7UW1|1|A|G|1831
*
7UW1|1|A|C|1901
7UW1|1|A|G|1902
*
7UW1|1|A|C|1920
7UW1|1|A|C|1921
7UW1|1|A|U|1922
7UW1|1|A|A|1923
7UW1|1|A|A|1924
7UW1|1|A|G|1925
7UW1|1|A|G|1926
7UW1|1|A|U|1927
7UW1|1|A|A|1928
7UW1|1|A|G|1929
*
7UW1|1|A|C|1963
7UW1|1|A|G|1964
7UW1|1|A|A|1965
7UW1|1|A|A|1966
7UW1|1|A|U|1967
7UW1|1|A|G|1968

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA