J4_7UW1_012

3D structure

PDB id

7UW1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii 70S ribosome-Streptothricin-D complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GAGUAAUG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

7UW1|1|a|U|117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7UW1_012 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2073

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7UW1|1|a|G|111
7UW1|1|a|A|112
7UW1|1|a|G|113
7UW1|1|a|U|114
7UW1|1|a|A|115
7UW1|1|a|A|116
7UW1|1|a|U|117
7UW1|1|a|G|118
*
7UW1|1|a|U|235
7UW1|1|a|C|236
*
7UW1|1|a|G|282
7UW1|1|a|U|283
7UW1|1|a|A|284
7UW1|1|a|G|285
*
7UW1|1|a|C|307
7UW1|1|a|C|308

Current chains

Chain a

16s Ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17