J4_7V2L_001

3D structure

PDB id

7V2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K1k2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

7V2L|1|A|C|115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7V2L_001 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0707

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7V2L|1|A|G|109
7V2L|1|A|A|110
7V2L|1|A|G|111
7V2L|1|A|U|112
7V2L|1|A|A|113
7V2L|1|A|A|114
7V2L|1|A|C|115
7V2L|1|A|G|116
*
7V2L|1|A|U|235
7V2L|1|A|C|236
*
7V2L|1|A|G|282
7V2L|1|A|U|283
7V2L|1|A|A|284
7V2L|1|A|G|285
*
7V2L|1|A|C|307
7V2L|1|A|C|308

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17