J4_7V2O_003
3D structure
- PDB id
- 7V2O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophilus 30S ribosome with KsgA, class K4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GGG*CGAAAG*CCCUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 7V2O|1|A|G|560, 7V2O|1|A|A|799, 7V2O|1|A|C|801, 7V2O|1|A|A|803
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7V2O_003 not in the Motif Atlas
- Homologous match to J4_4LFB_003
- Geometric discrepancy: 0.0716
- The information below is about J4_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
7V2O|1|A|G|559
7V2O|1|A|G|560
7V2O|1|A|G|561
*
7V2O|1|A|C|748
7V2O|1|A|G|749
7V2O|1|A|A|750
7V2O|1|A|A|751
7V2O|1|A|A|752
7V2O|1|A|G|753
*
7V2O|1|A|C|794
7V2O|1|A|C|795
7V2O|1|A|C|796
7V2O|1|A|U|797
7V2O|1|A|A|798
7V2O|1|A|A|799
7V2O|1|A|A|800
7V2O|1|A|C|801
7V2O|1|A|G|802
7V2O|1|A|A|803
7V2O|1|A|U|804
7V2O|1|A|G|805
*
7V2O|1|A|C|857
7V2O|1|A|C|858
Current chains
- Chain A
- 16s ribosomal RNA
Nearby chains
- Chain H
- 30S ribosomal protein S8
- Chain K
- 30S ribosomal protein S11
- Chain L
- 30S ribosomal protein S12
- Chain O
- 30S ribosomal protein S15
- Chain Q
- 30S ribosomal protein S17
- Chain U
- Ribosomal RNA small subunit methyltransferase A
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