J4_7WTQ_002
3D structure
- PDB id
- 7WTQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-2 (without Rps2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 7WTQ|1|C2|A|623, 7WTQ|1|C2|A|1026, 7WTQ|1|C2|C|1028, 7WTQ|1|C2|U|1029, 7WTQ|1|C2|A|1030, 7WTQ|1|C2|U|1031
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7WTQ_002 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.1036
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7WTQ|1|C2|A|622
7WTQ|1|C2|A|623
7WTQ|1|C2|G|624
*
7WTQ|1|C2|C|975
7WTQ|1|C2|G|976
7WTQ|1|C2|A|977
7WTQ|1|C2|A|978
7WTQ|1|C2|A|979
7WTQ|1|C2|G|980
*
7WTQ|1|C2|C|1021
7WTQ|1|C2|C|1022
7WTQ|1|C2|A|1023
7WTQ|1|C2|U|1024
7WTQ|1|C2|A|1025
7WTQ|1|C2|A|1026
7WTQ|1|C2|A|1027
7WTQ|1|C2|C|1028
7WTQ|1|C2|U|1029
7WTQ|1|C2|A|1030
7WTQ|1|C2|U|1031
7WTQ|1|C2|G|1032
*
7WTQ|1|C2|U|1103
7WTQ|1|C2|U|1104
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain CA
- Pre-rRNA-processing protein PNO1
- Chain CC
- Ribosome biogenesis protein TSR1
- Chain SL
- 40S ribosomal protein S11-A
- Chain SN
- 40S ribosomal protein S13
- Chain SO
- 40S ribosomal protein S14-A
- Chain SW
- 40S ribosomal protein S22-A
- Chain SX
- 40S ribosomal protein S23-A
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