J4_7WTS_002

3D structure

PDB id

7WTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State UTP14

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAG*CGAAAG*CCAUAAACGAUG*UU

Length

23 nucleotides

Bulged bases

7WTS|1|2|A|672, 7WTS|1|2|A|1083, 7WTS|1|2|C|1085, 7WTS|1|2|A|1087

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7WTS_002 not in the Motif Atlas

Homologous match to J4_8P9A_022

Geometric discrepancy: 0.1269

The information below is about J4_8P9A_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_14595.1

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

7WTS|1|2|A|671
7WTS|1|2|A|672
7WTS|1|2|G|673
*
7WTS|1|2|C|1032
7WTS|1|2|G|1033
7WTS|1|2|A|1034
7WTS|1|2|A|1035
7WTS|1|2|A|1036
7WTS|1|2|G|1037
*
7WTS|1|2|C|1078
7WTS|1|2|C|1079
7WTS|1|2|A|1080
7WTS|1|2|U|1081
7WTS|1|2|A|1082
7WTS|1|2|A|1083
7WTS|1|2|A|1084
7WTS|1|2|C|1085
7WTS|1|2|G|1086
7WTS|1|2|A|1087
7WTS|1|2|U|1088
7WTS|1|2|G|1089
*
7WTS|1|2|U|1160
7WTS|1|2|U|1161

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 3

Probable dimethyladenosine transferase

Chain 5

U3 small nucleolar RNA-associated protein 14 homolog A

Chain L

40S ribosomal protein S11

Chain N

40S ribosomal protein S13

Chain O

40S ribosomal protein S14

Chain W

40S ribosomal protein S15a

Chain X

40S ribosomal protein S23

Chain u

Pre-rRNA-processing protein TSR1 homolog