J4_7XAM_007

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7XAM_007 not in the Motif Atlas

Homologous match to J4_7A0S_008

Geometric discrepancy: 0.0841

The information below is about J4_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7XAM|1|A|G|1989
7XAM|1|A|A|1990
7XAM|1|A|C|1991
7XAM|1|A|U|1992
7XAM|1|A|G|1993
*
7XAM|1|A|C|2005
7XAM|1|A|A|2006
7XAM|1|A|C|2007
7XAM|1|A|A|2008
7XAM|1|A|G|2009
*
7XAM|1|A|U|2044
7XAM|1|A|G|2045
7XAM|1|A|A|2046
7XAM|1|A|C|2047
*
7XAM|1|A|G|2199
7XAM|1|A|U|2200
7XAM|1|A|A|2201
7XAM|1|A|A|2202
7XAM|1|A|C|2203

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2