J4_7XNX_009
3D structure
- PDB id
- 7XNX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GACUG*CAAAG*UGAUU*AUGA(A2M)C
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7XNX_009 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.0994
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.1
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
7XNX|1|L1|G|3634
7XNX|1|L1|A|3635
7XNX|1|L1|C|3636
7XNX|1|L1|U|3637
7XNX|1|L1|G|3638
*
7XNX|1|L1|C|3650
7XNX|1|L1|A|3651
7XNX|1|L1|A|3652
7XNX|1|L1|A|3653
7XNX|1|L1|G|3654
*
7XNX|1|L1|U|3690
7XNX|1|L1|G|3691
7XNX|1|L1|A|3692
7XNX|1|L1|U|3693
7XNX|1|L1|U|3694
*
7XNX|1|L1|A|3821
7XNX|1|L1|U|3822
7XNX|1|L1|G|3823
7XNX|1|L1|A|3824
7XNX|1|L1|A2M|3825
7XNX|1|L1|C|3826
Current chains
- Chain L1
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain Ln
- 60S ribosomal protein L41
- Chain Lp
- 60S ribosomal protein L37a
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: