J4_7XNX_013

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUAA*(OMU)C*GUG*CGCC

Length

13 nucleotides

Bulged bases

7XNX|1|L1|U|4677

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNX|1|L1|G|4587
7XNX|1|L1|U|4588
7XNX|1|L1|A|4589
7XNX|1|L1|A|4590
*
7XNX|1|L1|OMU|4620
7XNX|1|L1|C|4621
*
7XNX|1|L1|G|4676
7XNX|1|L1|U|4677
7XNX|1|L1|G|4678
*
7XNX|1|L1|C|4712
7XNX|1|L1|G|4713
7XNX|1|L1|C|4714
7XNX|1|L1|C|4715

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LO

60S ribosomal protein L13a

Chain LV

60S ribosomal protein L23