J4_7XNY_002

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

7XNY|1|L1|C|216, 7XNY|1|L1|C|217, 7XNY|1|L1|A|218, 7XNY|1|L1|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNY|1|L1|C|196
7XNY|1|L1|A|197
7XNY|1|L1|A|198
7XNY|1|L1|G|199
*
7XNY|1|L1|C|215
7XNY|1|L1|C|216
7XNY|1|L1|C|217
7XNY|1|L1|A|218
7XNY|1|L1|G|219
7XNY|1|L1|C|220
7XNY|1|L1|C|221
7XNY|1|L1|C|222
*
7XNY|1|L1|G|226
7XNY|1|L1|A|227
7XNY|1|L1|C|228
*
7XNY|1|L1|G|240
7XNY|1|L1|G|241
7XNY|1|L1|U|242
7XNY|1|L1|A|243
7XNY|1|L1|G|244

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26