J4_7XNY_003

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUC*GCC*GCGC*GGAGCG

Length

16 nucleotides

Bulged bases

7XNY|1|L1|G|1271, 7XNY|1|L1|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNY|1|L1|C|981
7XNY|1|L1|U|982
7XNY|1|L1|C|983
*
7XNY|1|L1|G|1070
7XNY|1|L1|C|1071
7XNY|1|L1|C|1072
*
7XNY|1|L1|G|1240
7XNY|1|L1|C|1241
7XNY|1|L1|G|1242
7XNY|1|L1|C|1243
*
7XNY|1|L1|G|1268
7XNY|1|L1|G|1269
7XNY|1|L1|A|1270
7XNY|1|L1|G|1271
7XNY|1|L1|C|1272
7XNY|1|L1|G|1273

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein L7

Chain Lb

60S ribosomal protein L29