J4_7XNY_009

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAA(UY1)G

Length

21 nucleotides

Bulged bases

7XNY|1|L1|UY1|3818

QA status

Modified nucleotides: UY1

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7XNY_009 not in the Motif Atlas

Homologous match to J4_8C3A_007

Geometric discrepancy: 0.0724

The information below is about J4_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNY|1|L1|C|3696
7XNY|1|L1|U|3697
7XNY|1|L1|G|3698
*
7XNY|1|L1|C|3752
7XNY|1|L1|G|3753
*
7XNY|1|L1|C|3771
7XNY|1|L1|U|3772
7XNY|1|L1|U|3773
7XNY|1|L1|A|3774
7XNY|1|L1|A|3775
7XNY|1|L1|G|3776
7XNY|1|L1|G|3777
7XNY|1|L1|U|3778
7XNY|1|L1|A|3779
7XNY|1|L1|G|3780
*
7XNY|1|L1|U|3814
7XNY|1|L1|G|3815
7XNY|1|L1|A|3816
7XNY|1|L1|A|3817
7XNY|1|L1|UY1|3818
7XNY|1|L1|G|3819

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA