J4_7Y41_003

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGAUUAG*CC*GUAC*GG

Length

15 nucleotides

Bulged bases

7Y41|1|A|G|1386, 7Y41|1|A|U|1389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7Y41_003 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.4605

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

7Y41|1|A|C|1385
7Y41|1|A|G|1386
7Y41|1|A|A|1387
7Y41|1|A|U|1388
7Y41|1|A|U|1389
7Y41|1|A|A|1390
7Y41|1|A|G|1391
*
7Y41|1|A|C|1409
7Y41|1|A|C|1410
*
7Y41|1|A|G|1863
7Y41|1|A|U|1864
7Y41|1|A|A|1865
7Y41|1|A|C|1866
*
7Y41|1|A|G|2233
7Y41|1|A|G|2234

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L17

Chain T

50S ribosomal protein L22

Chain b

50S ribosomal protein L32