J4_7Y7C_001

3D structure

PDB id

7Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Asp(G34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.51 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

7Y7C|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7Y7C_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2474

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7Y7C|1|A|G|115
7Y7C|1|A|A|116
7Y7C|1|A|G|117
7Y7C|1|A|U|118
7Y7C|1|A|A|119
7Y7C|1|A|A|120
7Y7C|1|A|U|121
7Y7C|1|A|G|122
*
7Y7C|1|A|U|239
7Y7C|1|A|G|240
*
7Y7C|1|A|C|286
7Y7C|1|A|U|287
7Y7C|1|A|A|288
7Y7C|1|A|G|289
*
7Y7C|1|A|C|311
7Y7C|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17