J4_7Y7C_002

3D structure

PDB id

7Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Asp(G34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.51 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

7Y7C|1|A|C|183, 7Y7C|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7Y7C_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1603

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7Y7C|1|A|G|142
7Y7C|1|A|A|143
7Y7C|1|A|G|144
*
7Y7C|1|A|C|178
7Y7C|1|A|A|179
7Y7C|1|A|U|180
7Y7C|1|A|A|181
7Y7C|1|A|A|182
7Y7C|1|A|C|183
7Y7C|1|A|G|184
*
7Y7C|1|A|C|193
7Y7C|1|A|C|194
7Y7C|1|A|A|195
7Y7C|1|A|A|196
7Y7C|1|A|A|197
7Y7C|1|A|G|198
*
7Y7C|1|A|U|219
7Y7C|1|A|G|220
7Y7C|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20