J4_7Y7C_004

3D structure

PDB id

7Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Asp(G34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.51 Å

Loop

Sequence

UU(1MA)G*UCC*GAGA(5MC)(5MC)*GA

Length

15 nucleotides

Bulged bases

7Y7C|1|V|U|8, 7Y7C|1|V|5MC|47

QA status

Modified nucleotides: 1MA, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7Y7C_004 not in the Motif Atlas

Homologous match to J4_1IL2_001

Geometric discrepancy: 0.1675

The information below is about J4_1IL2_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.27

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

53

Unit IDs

7Y7C|1|V|U|7
7Y7C|1|V|U|8
7Y7C|1|V|1MA|9
7Y7C|1|V|G|10
*
7Y7C|1|V|U|25
7Y7C|1|V|C|26
7Y7C|1|V|C|27
*
7Y7C|1|V|G|43
7Y7C|1|V|A|44
7Y7C|1|V|G|45
7Y7C|1|V|A|46
7Y7C|1|V|5MC|47
7Y7C|1|V|5MC|48
*
7Y7C|1|V|G|64
7Y7C|1|V|A|65

Current chains

Chain V

A-site tRNA-Asp

Nearby chains

Chain a

Large subunit ribosomal RNA; LSU rRNA