J4_7Y7D_006

3D structure

PDB id

7Y7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7Y7D|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7Y7D_006 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1119

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7Y7D|1|a|C|268
7Y7D|1|a|C|269
*
7Y7D|1|a|G|370
7Y7D|1|a|A|371
7Y7D|1|a|G|372
7Y7D|1|a|U|373
7Y7D|1|a|A|374
7Y7D|1|a|G|375
*
7Y7D|1|a|U|399
7Y7D|1|a|G|400
7Y7D|1|a|A|401
7Y7D|1|a|A|402
7Y7D|1|a|U|403
7Y7D|1|a|A|404
7Y7D|1|a|U|405
7Y7D|1|a|G|406
*
7Y7D|1|a|C|421
7Y7D|1|a|A|422
7Y7D|1|a|A|423
7Y7D|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L9

Chain w

50S ribosomal protein L28