J4_7Y7F_002

3D structure

PDB id

7Y7F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

7Y7F|1|A|C|183, 7Y7F|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7Y7F_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1304

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7Y7F|1|A|G|142
7Y7F|1|A|A|143
7Y7F|1|A|G|144
*
7Y7F|1|A|C|178
7Y7F|1|A|A|179
7Y7F|1|A|U|180
7Y7F|1|A|A|181
7Y7F|1|A|A|182
7Y7F|1|A|C|183
7Y7F|1|A|G|184
*
7Y7F|1|A|C|193
7Y7F|1|A|C|194
7Y7F|1|A|A|195
7Y7F|1|A|A|196
7Y7F|1|A|A|197
7Y7F|1|A|G|198
*
7Y7F|1|A|U|219
7Y7F|1|A|G|220
7Y7F|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20