J4_7Y7F_006

3D structure

PDB id

7Y7F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7Y7F|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7Y7F_006 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1114

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7Y7F|1|a|C|268
7Y7F|1|a|C|269
*
7Y7F|1|a|G|370
7Y7F|1|a|A|371
7Y7F|1|a|G|372
7Y7F|1|a|U|373
7Y7F|1|a|A|374
7Y7F|1|a|G|375
*
7Y7F|1|a|U|399
7Y7F|1|a|G|400
7Y7F|1|a|A|401
7Y7F|1|a|A|402
7Y7F|1|a|U|403
7Y7F|1|a|A|404
7Y7F|1|a|U|405
7Y7F|1|a|G|406
*
7Y7F|1|a|C|421
7Y7F|1|a|A|422
7Y7F|1|a|A|423
7Y7F|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L9

Chain w

50S ribosomal protein L28