J4_7YLA_001

3D structure

PDB id

7YLA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-HflX complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7YLA|1|I|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7YLA_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1123

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7YLA|1|I|C|268
7YLA|1|I|C|269
*
7YLA|1|I|G|370
7YLA|1|I|A|371
7YLA|1|I|G|372
7YLA|1|I|U|373
7YLA|1|I|A|374
7YLA|1|I|G|375
*
7YLA|1|I|U|399
7YLA|1|I|G|400
7YLA|1|I|A|401
7YLA|1|I|A|402
7YLA|1|I|U|403
7YLA|1|I|A|404
7YLA|1|I|U|405
7YLA|1|I|G|406
*
7YLA|1|I|C|421
7YLA|1|I|A|422
7YLA|1|I|A|423
7YLA|1|I|G|424

Current chains

Chain I

Escherichia coli strain K-12 substr. MG1655_TMP32XR1 chromosome, complete genome

Nearby chains

Chain P

50S ribosomal protein L9

Chain f

50S ribosomal protein L28